pysodb

Welcome to pysodb’s documentation!

pysodb is a python package that provides the interface to get data in SODB .

Contents:

• Installation
• APIs

tutorial:

• Play with scanpy
  • 4i
  • CODEX
  • IMC
  • MERFISH
  • MIBI
  • Silde-seq
  • ST
  • STARmap
  • Stereo-seq
  • Visium
• Play with squidpy
  • 4i
  • CODEX
  • MRFISH
  • MIBI
  • Slide-seq
  • ST
  • STARmap
  • Stereo-seq
  • Visium

Note

Please consider citing this project in your publications if it helps your research.

Yuan, Z., Pan, W., Zhao, X. et al. SODB facilitates comprehensive exploration of spatial omics data. Nat Methods (2023). https://doi.org/10.1038/s41592-023-01773-7